A collection of personal pokemon theories
The Unova Wars
So as we all know, there was some form of a war before the main games. However, this war was on a much larger scale than you would think. Unova, being the dominant nation in the world at the time, was set on world conquest. Essentially, they declared war on everyone else.
Orre’s Part in the War
Unova may have been the dominant nation in terms of technology at the time, but in terms of size and power, Orre was the most fearsome nation in the world. However, because Orre had a lack of wild pokemon, Unova and Orre were evenly matched. When Unova began their conquest, Orre joined up with the ‘Island Nations’(Sinnoh, Kanto, Johto, Hoenn). They sent assistance to their allies, however, Orre is a great ways away from all the other regions-Orre is attached to the mainland, and Unova is practically on the other side of the world.
Trozei!
The events of Pokemon Trozei take place during the war-in an unnamed area between Kanto, Johto and Hoenn. The SoL is actually a group of combatants from the island nations who are conducting the transfer of pokemon to areas where trainers are needed most. The Phobos Battalion is composed of Unova agents sent to interrupt enemy operations and steal pokemon to power Unova technology.
The Main Characters in the Mystery Dungeons Series are Washed up Orre Soldiers
Orre sent a ship with trainers to assist the Island Nations in their fight-however, in the midst of a storm, the ship is devoured by the waves, and only four of the ship’s crew washes up, and even then, two are dead.
One washes up with his Grovyle in the area that the Explorers game takes place in. They then proceed to watch time stop before their eyes and go through the plot of the game.
The protagonist of Rescue Team actually drowns, but a mysterious figure(see Cyrus theory) intervenes. The protagonist is recreated as a pokemon and awakes in the area of the Rescue Team games.
Gengar is one of the trainers from this ship, too. He survived the wreck though, and it wasn’t until he met Ninetales that he became a pokemon.
The protagonist of Explorers wasn’t just sent back in time-he died
When Grovlye and the main character are sent back in time, they are being attacked by Primal Dialga. MC shoves Grovyle out of the way so that he flawlessly arrives in the past-however, this means that MC sacrificed himself, a move that Grovlye would later mirror. Yet again, a mysterious figure intervenes and tests the will of the MC, and recreates him as a pokemon.
Duskull/Dusknoir is the other dead crew member
Duskull is an undead pokemon, I mean, it’s a floating skull for god’s sake. Duskull was the last crew member that washed up, already dead. He then became Duskull and got a job as a banker. He displays his thug-like attributes throughout the game with his greed for money and becoming a mercenary later on, showing he still is somewhat of the Orre trainer he used to be. Once time stops, Duskull sits in his banking stall, horrified by the massacre. He’s one of the only survivors-after all, how can a dead man die?
Eventually, he lost all emotion. He was then picked up by Primal Dialga for use as an eternal soldier. When I say he lost all emotion, I mean to the point where he even attempts to kill his old crewmate because of an order.
The Sinnoh Meteorites
In the Rescue Team games, Rayquaza managed to get rid of the meteor headed towards the world. However, pieces of the meteor had already broken off and were heading straight for Sinnoh.
The meteorites crashed straight into Veilstone City. A mysterious pokemon-Deoxys-emerged from these ruins, but quickly escaped from the scene. Sinnoh was plunged into chaos, and Unova took the opportunity to eliminate the strongest power of the Island Nations.
The Hoenn Rocket
Hoenn saw that Unova was moving in quickly. There was very little chance that any of the nations would get out of this mess alive and independent. Taking an example from the devastation of the Sinnoh Meteorite, Hoenn created a rocket that they would send crashing into the moon. The moon would shatter and the pieces would fall and destroy everything. The weather institute was created to edit the atmosphere above Hoenn to protect them from this devastation and leave them as the only living population.
The weather institute was incomplete when the rocket needed to be launched, though. The people of Hoenn decided that they would rather burn than be taken under control of Unova. It was a suicide mission.
The rocket was launched, but Latios and Latias, the guardians of the region, lept into action to stop the rocket and protect the people of the world. Their combined power wasn’t enough, though. It wasn’t until Deoxys arrived that the rocket was shattered and the world safe.
Unova spies leapt into action and took out the power grid, and to this day you can find leftover living bombs in the power factory.
Hoenn was done for, and Unova quickly took over. Kanto and Johto were quickly consumed by Unova, since they had no reinforcements and were the weakest of the Island Nations.
The Treaty
Rather than fighting, the remaining nations of the world decided to create an uneasy peace treaty. The Ranger Union only agreed to it as it ended the pokemon torture and established free care for pokemon in all the nations-the pokemon centers.
Orre agreed to the treaty, but they weren’t bound by it as much as the other nations were. Orre generally retained its freedom, since Unova didn’t want to anger the ginormous nation. Ransei was left out of the agreement, since no one wanted to mess with that unstable nation.
The Galactic and Rocket Rebels
Team Galactic and Team Rocket are composed of the remaining members of the Hoenn Rocket Project. Some members, such as Cyrus, weren’t soldiers in the war but were old enough to experience and remember the pain that Unova brought to the world.
Genesect
Unova wasn’t the largest nation out there-so how did they manage to conquer all these lands?
They had a secret weapon-the genetically engineered Genesect. It was their ultimate power. No one could stop it-it was practically invincible. That is, until…
The Mewtwo Counter
Mewtwo was an attempt by Team Rocket to create a pokemon powerful enough to combat Genesect. With Mewtwo, they could start an uprising, overthrow Unova once and for all! However, as we all know, Mewtwo rebelled against Giovanni. That, sadly, was the end of any hope in Kanto for defeating Unova for the time being.
The Man who Became God
So, we know that Cyrus wanted to change the world for the better. He ended up trapped in the Distortion Realm, outside of time and space itself. Essentially, he was a god. He achieved his dream, but he had no way to reshape the world. He couldn’t actively interact with the world, for the most part. He was left watching time and space.
He does, however, interfere with the real world on a few occasions-he saves the heroes of the Mystery Dungeon series, he ensures Grovlye, Dusknoir and Celebi’s continued survival, etc.